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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848372.1_cds_XP_016510361.1_23204
CDS Infomation

[gene=LOC107827690] [db_xref=GeneID:107827690] [protein=asparagine--tRNA ligase, cytoplasmic 2-like isoform X3] [protein_id=XP_016510361.1] [location=join(142553..142756,142832..142951,143041..143277,143580..144164,144253..144438,144527..144591,144672..144801,144936..144994,145083..145266)] [gbkey=CDS]
Sequence

ATGGCGTCAGAACAAGCTCCGGTTGAAATGCCAGCCACCTTTTCGAAATACACGAAAAGG
GTGATGTTGAAAATTATATTAGGACGCGATGATGGTGGGGTTGGATTGATAGGTCAGAGG
ATTGTAATTGGGGGGTGGGTTAAATCCTCTATGGAGATCAGAAAACAACCTGTAACGCCA
CCACCAGCGGCCCCTGCTCCTCAGGTTTTTGGGGCAGGGGAATATCGTGTACGTGAAAAA
CTGGATGCTGTTATTCGAAAAGCACCTCAGCCCTCAATCTCAATATTGCAAGTTAGTGAT
GGTTCTTGTGTGCCCAGTCTTCAGGTTCTTGTGAACTCAGCACTAGCGAATCCGTGCCAA
GTTATGCCAACTGGAACATGTGTATTAATTGAAGGTATATTGCAGCAGCCATCAGTGCAG
GGGAAACATTATGTTGAGCTGCAAGCAGAGAAAATCTTACATCTTGGTTTGGTAGATGAA
TCTAAGTATCCATTATCCAAAAAACGATTGCCTCTGGAATCTTTAAGAGATTGTTCCCAC
TTTCGGCCACGGACAACAACGGTGGCATCTGTCATGCGAATTCATAATTCCCTTACTTGG
GCAACTCATGCCTTCTTCCAAGATCACGGGTTCCTTCATGTTCAAGTACCCATAATTACA
AGCACTGATTCTGAAGGTTTTAGTGAGAAATTTCTTGTTACAACTCTTCTTAGCAAGGGG
AAAAAGGATGATCAAATTAGTCCCACCGAAAATGCTGGAGTCAGTGTTGAAGCCATCCGG
GCTTCTATCAAAGAAAAAACTAAGAAAGTTGAAGAACTTAGCAGAACTAACAGCAATAAG
GAAGCCTTACTTGCTGCACAGCAGGACCTGATGAAAACAAATGAGCTAGTATCACAGCTG
GAAGCTAGGCAAAAAGCAAAATCTGGAGTCACAATTGAAACCAGAAAATTTGACTTCTCT
AAAGATTTCTTTACACGCCAGACTTATCTAACAGTTTCCGGTCGTCTTCATCTTGAGAGT
CAAGCCTGTGCTCTAGGAAATGTCTACTCATTTGGCCCCAGATTTAAAGCAGAGAAATTA
GAGTCCAAAAAGTCATTAGCTGAGACATGGATGGTAGATGTTGAAATGGCCTTCTCAGAG
TTAGAGGATGCCATGGATTGCGCAAACGACTTTTTGAAGTTTGTATGCAAAAGGATTCTA
GAGGGTTGCGTGGAAGATCTACAATTTGTCTTGAAAAGAATAGACAAATCTGTTATGGAG
CGCCTCCAATTTACCATATCAAGTTCATTTGAGAGGATTTCTTATGCCAAAGCCATAGAA
ATTCTGAGACAGGTTGCTGGGAAGAAGTTTCAAAGTAAGATAGAATTGGGAGTTTCTTTG
ACCGAAGAACATGAAAGCTATTTGGTTGATGAGATATATAAAAAACCAGTCATTGTATAC
AACCATCCAAAAGAACTTAAGCCATTTTATGTCCGTTTGAATGATGATGGCAAAACAGTT
GCAACATTTGATGTGATTCTACCAAAGATGGGAGCTCTGATTAGGGGAAGCCAAAGTGAA
GAACGGTTCAATGTGTTGAGCTCAAGAATGAAGGAACTGGGCTTGCAAAAACAGCAGTAC
GAATGGTATCTAGATCTATGCAGGCATGGCTCTGCCAAAACCTCTGGTTTCAGCCTAATG
CTTGAACCTTTGGTGCTTTATGCCACTGGCCTGAATGATGTCAAAGATGTTGTACCTTTT
GCTAGAAGTTTCGGCAGAGCCAATAACTAA

Peptide Sequence

PEP ID

XP_016510361.1
PEP Infomation

PREDICTED: asparagine--tRNA ligase, cytoplasmic 2-like isoform X3 [Nicotiana tabacum]
Sequence

MASEQAPVEMPATFSKYTKRVMLKIILGRDDGGVGLIGQRIVIGGWVKSSMEIRKQPVTP
PPAAPAPQVFGAGEYRVREKLDAVIRKAPQPSISILQVSDGSCVPSLQVLVNSALANPCQ
VMPTGTCVLIEGILQQPSVQGKHYVELQAEKILHLGLVDESKYPLSKKRLPLESLRDCSH
FRPRTTTVASVMRIHNSLTWATHAFFQDHGFLHVQVPIITSTDSEGFSEKFLVTTLLSKG
KKDDQISPTENAGVSVEAIRASIKEKTKKVEELSRTNSNKEALLAAQQDLMKTNELVSQL
EARQKAKSGVTIETRKFDFSKDFFTRQTYLTVSGRLHLESQACALGNVYSFGPRFKAEKL
ESKKSLAETWMVDVEMAFSELEDAMDCANDFLKFVCKRILEGCVEDLQFVLKRIDKSVME
RLQFTISSSFERISYAKAIEILRQVAGKKFQSKIELGVSLTEEHESYLVDEIYKKPVIVY
NHPKELKPFYVRLNDDGKTVATFDVILPKMGALIRGSQSEERFNVLSSRMKELGLQKQQY
EWYLDLCRHGSAKTSGFSLMLEPLVLYATGLNDVKDVVPFARSFGRANN

Transcript Sequence

Gene sequence data has not been registered.